High-Performance Computing at the NIH

Common structural biology calculations with PDB coordinate files

Enter PDB ID code: (e.g. 1crn)
Upload PDB file:

Calculate:     Output type:

Surface calculation Options

Surface probe size: Å
Atoms to use:

Surface calculation Options

Surface probe size: Atoms to use:

Volume calculation Options

Method: Radii: Atoms to use:

Raw sequence Options

Return what:

Spinning molecule Options

Initial orientation of molecule: X-axis: Y-axis: Z-axis:

Display:     Colors:     Background:

Rotate around:     Rotation angle:     No. of frames:

Indie format:     Size : (pixels)     Delay: (gif only)

Hint: To slow down the movie, increase the number of frames

Note: the H-bonds, fasta-format sequence and raw PDB data are text-only. No graphics will be displayed even if selected.
Likewise, the Spinning Molecule Movie is graphics-only.