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UCSC danRer11 (gbdb)

The UCSC Genomics Institute maintains a broad collection of vertebrate and model organism assemblies and annotations, along with a large suite of tools for viewing, analyzing and downloading data.

Database Organization UCSC Genomics Institute 
Database Website https://genome.ucsc.edu/
Location /fdb/genomebrowser/gbdb/danRer11
Last Updated 2026-09-08
Organism Danio rerio
Related Application ucsc
Update Schedule weekly

100 Relevant Files

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/fdb/genomebrowser/gbdb/danRer11/danRer11.2bit
/fdb/genomebrowser/gbdb/danRer11/trackDb.ix
/fdb/genomebrowser/gbdb/danRer11/trackDb.ixx
/fdb/genomebrowser/gbdb/danRer11/trackDb.offsets
/fdb/genomebrowser/gbdb/danRer11/trackDb.offsets.ixx
/fdb/genomebrowser/gbdb/danRer11/trackDb.txt
/fdb/genomebrowser/gbdb/danRer11/bacEndPairs/bacEndPairs.bb
/fdb/genomebrowser/gbdb/danRer11/bbi/clinvarLift.bb
/fdb/genomebrowser/gbdb/danRer11/bbi/evaSnp.bb
/fdb/genomebrowser/gbdb/danRer11/bbi/evaSnp4.bb
/fdb/genomebrowser/gbdb/danRer11/bbi/evaSnp5.bb
/fdb/genomebrowser/gbdb/danRer11/bbi/evaSnp6.bb
/fdb/genomebrowser/gbdb/danRer11/bbi/evaSnp7.bb
/fdb/genomebrowser/gbdb/danRer11/bbi/evaSnp8.bb
/fdb/genomebrowser/gbdb/danRer11/bbi/gc5BaseBw/gc5Base.bw
/fdb/genomebrowser/gbdb/danRer11/bbi/grcIncidentDb/danRer11.grcIncidentDb.bb
/fdb/genomebrowser/gbdb/danRer11/choriCloneEnds/CH1073.bb
/fdb/genomebrowser/gbdb/danRer11/choriCloneEnds/CH211.bb
/fdb/genomebrowser/gbdb/danRer11/choriCloneEnds/CH73.bb
/fdb/genomebrowser/gbdb/danRer11/crisprAll/crispr.bb
/fdb/genomebrowser/gbdb/danRer11/crisprAll/crisprDetails.tab
/fdb/genomebrowser/gbdb/danRer11/html/description.html
/fdb/genomebrowser/gbdb/danRer11/jaspar/JASPAR2026.bb
/fdb/genomebrowser/gbdb/danRer11/liftOver/danRer11ToCalMil1.over.chain.gz
/fdb/genomebrowser/gbdb/danRer11/liftOver/danRer11ToDanRer10.over.chain.gz
/fdb/genomebrowser/gbdb/danRer11/liftOver/danRer11ToDanRer7.over.chain.gz
/fdb/genomebrowser/gbdb/danRer11/liftOver/danRer11ToDm6.over.chain.gz
/fdb/genomebrowser/gbdb/danRer11/liftOver/danRer11ToGCA_018400075.1.over.chain.gz
/fdb/genomebrowser/gbdb/danRer11/liftOver/danRer11ToGCF_002234675.1.over.chain.gz
/fdb/genomebrowser/gbdb/danRer11/liftOver/danRer11ToGCF_905237065.1.over.chain.gz
/fdb/genomebrowser/gbdb/danRer11/liftOver/danRer11ToGalGal6.over.chain.gz
/fdb/genomebrowser/gbdb/danRer11/liftOver/danRer11ToHg38.over.chain.gz
/fdb/genomebrowser/gbdb/danRer11/liftOver/danRer11ToMm10.over.chain.gz
/fdb/genomebrowser/gbdb/danRer11/liftOver/danRer11ToMm39.over.chain.gz
/fdb/genomebrowser/gbdb/danRer11/ncbiOrtho/ncbiOrtho.bb
/fdb/genomebrowser/gbdb/danRer11/ncbiOrtho/ncbiOrtho.ix
/fdb/genomebrowser/gbdb/danRer11/ncbiOrtho/ncbiOrtho.ixx
/fdb/genomebrowser/gbdb/danRer11/ncbiRefSeq/ncbiRefSeqGenomicDiff.bb
/fdb/genomebrowser/gbdb/danRer11/ncbiRefSeq/ncbiRefSeqOther.bb
/fdb/genomebrowser/gbdb/danRer11/ncbiRefSeq/ncbiRefSeqOther.ix
/fdb/genomebrowser/gbdb/danRer11/ncbiRefSeq/ncbiRefSeqOther.ixx
/fdb/genomebrowser/gbdb/danRer11/ncbiRefSeq/ncbiRefSeqVersion.txt
/fdb/genomebrowser/gbdb/danRer11/ncbiRefSeq/seqNcbiRefSeq.rna.fa
/fdb/genomebrowser/gbdb/danRer11/quickLift/GCA_018400075.1.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/GCA_018400075.1.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/GCA_052040795.1.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/GCA_052040795.1.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/GCA_936440315.1.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/GCA_936440315.1.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/GCA_936446605.1.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/GCA_936446605.1.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/GCF_002234675.1.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/GCF_002234675.1.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/GCF_049306965.1.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/GCF_049306965.1.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/GCF_905237065.1.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/GCF_905237065.1.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/calMil1.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/calMil1.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/ce11.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/ce11.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/danRer10.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/danRer10.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/danRer4.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/danRer4.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/danRer7.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/danRer7.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/dm6.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/dm6.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/galGal6.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/galGal6.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/hg38.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/hg38.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/mm10.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/mm10.link.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/mm39.bb
/fdb/genomebrowser/gbdb/danRer11/quickLift/mm39.link.bb
/fdb/genomebrowser/gbdb/danRer11/transMap/V5/danRer11.ensembl.transMapV5.bigPsl
/fdb/genomebrowser/gbdb/danRer11/transMap/V5/danRer11.est.transMapV5.bigPsl
/fdb/genomebrowser/gbdb/danRer11/transMap/V5/danRer11.refseq.transMapV5.bigPsl
/fdb/genomebrowser/gbdb/danRer11/transMap/V5/danRer11.rna.transMapV5.bigPsl
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipAliSwissprot.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipAliTrembl.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipChain.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipConflict.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipDisulfBond.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipDomain.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipFullSeq.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipInterest.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipLocCytopl.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipLocExtra.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipLocSignal.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipLocTransMemb.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipModif.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipMut.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipOther.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipRepeat.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipSplice.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/unipStruct.bb
/fdb/genomebrowser/gbdb/danRer11/uniprot/version.txt


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